bioc-issue-bot
commented
3 months ago Hi @angelovelle96
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: gINTomics
Title: Multi-Omics data integration
Version: 0.99.0
Authors@R: c(person("Angelo", "Velle", role = c("cre", "aut"),
email = "angelo.velle@unipd.it",
comment = c(ORCID = "0000-0002-4010-6390")),
person("Francesco", "Patane'", role = "aut",
email = "francesco.patane@unipd.it",
comment = c(ORCID = "0009-0001-8619-447X")),
person("Chiara", "Romualdi", role = "aut",
email = "chiara.romualdi@unipd.it",
comment = c(ORCID = "0000-0003-4792-9047")))
Description: gINTomics is an R package for Multi-Omics data integration and
visualization.
gINTomics is designed to detect the associationbetween the
expression of a target and of its regulators, taking into account
also their genomics modifications such as Copy Number Variations
(CNV) and methylation.
What is more, gINTomics allows integration results visualizations
via a Shiny-based interactive app.
License: AGPL-3
biocViews: GeneExpression, RNASeq, Microarray,
Visualization, CopyNumberVariation, GeneTarget
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Imports:
BiocParallel,
biomaRt,
OmnipathR,
edgeR,
ggplot2,
ggridges,
gtools,
MultiAssayExperiment,
miRBaseConverter,
plyr,
stringi,
stringr,
SummarizedExperiment,
methods,
stats,
reshape2,
randomForest,
Homo.sapiens,
Mus.musculus,
limma,
org.Hs.eg.db,
org.Mm.eg.db,
BiocGenerics,
GenomicFeatures,
ReactomePA,
clusterProfiler,
dplyr,
AnnotationDbi,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
shiny,
GenomicRanges,
ggtree,
shinydashboard,
plotly,
DT,
MASS,
InteractiveComplexHeatmap,
ComplexHeatmap,
visNetwork,
shiny.gosling,
ggvenn,
RColorBrewer,
utils,
grDevices,
callr,
circlize
Depends:
R (>= 4.3.0)
LazyData: false
Suggests:
BiocStyle,
knitr,
rmarkdown,
testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
BugReports: https://github.com/angelovelle96/gINTomics/issues
URL: https://github.com/angelovelle96/gINTomics
Kayla-Morrell
angelovelle96
lshep
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