bioc-issue-bot
commented
8 months ago Hi @ldammer
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: mosdef
Title: MOSt frequently used and useful Differential Expression Functions
Version: 0.99.0
Authors@R:
c(
person(
given = "Leon", family = "Dammer", role = c("aut"),
email = "lc.dammer@gmail.com", comment = c(ORCID = "0009-0008-4132-7639")
),
person(
given = "Federico", family = "Marini", role = c("aut", "cre"),
email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
)
)
Description: This package provides functionality to run a number of tasks in the
differential expression analysis workflow. This encompasses the most widely
used steps, from running various enrichment analysis tools with a unified interface
to creating plots and beautifying table components linking to external websites
and databases. This streamlines the generation of comprehensive analysis reports.
Imports:
dplyr,
DT,
ggplot2,
ggforce,
ggrepel,
htmltools,
methods,
AnnotationDbi,
topGO,
GO.db,
clusterProfiler,
goseq,
utils,
RColorBrewer,
rlang,
DESeq2,
scales,
SummarizedExperiment,
S4Vectors,
stats
Suggests:
knitr,
rmarkdown,
airway,
macrophage,
org.Hs.eg.db,
GeneTonic,
testthat (>= 3.0.0),
TxDb.Hsapiens.UCSC.hg38.knownGene,
BiocStyle
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
URL: https://github.com/imbeimainz/mosdef
BugReports: https://github.com/imbeimainz/mosdef/issues
Config/testthat/edition: 3
biocViews:
GeneExpression, Software, Transcription, Transcriptomics, DifferentialExpression,
Visualization, ReportWriting, GeneSetEnrichment, GO
ldammer
federicomarini
lshep
lazappi
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