bioc-issue-bot
commented
3 months ago Hi @AnnekathrinSilvia
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: GeDi
Title: Defining and visualizing the distances between different genesets
Version: 0.99.0
Date: 2024-03-21
Authors@R:
c(
person(
given = "Annekathrin", family = "Nedwed", role = c("aut", "cre"),
email = "anneludt@uni-mainz.de", comment = c(ORCID = "0000-0002-2475-4945")),
person(
given = "Federico", family = "Marini", role = c("aut"),
email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
)
)
Description: The package provides different distances measurements
to calculate the difference between genesets. Based on these scores
the genesets are clustered and visualized as graph. This is all
presented in an interactive Shiny application for easy usage.
Depends:
R (>= 4.4.0)
Imports:
GOSemSim,
Matrix,
shiny,
shinyWidgets,
bs4Dash,
rintrojs,
utils,
DT,
dplyr,
shinyBS,
STRINGdb,
igraph,
visNetwork,
shinycssloaders,
fontawesome,
grDevices,
parallel,
stats,
ggplot2,
plotly,
GeneTonic,
RColorBrewer,
scales,
readxl,
ggdendro,
ComplexHeatmap,
BiocNeighbors,
tm,
wordcloud2,
tools,
BiocParallel
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0),
DESeq2,
htmltools,
pcaExplorer,
AnnotationDbi,
macrophage,
topGO,
biomaRt,
ReactomePA,
clusterProfiler,
BiocStyle,
org.Hs.eg.db
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/AnnekathrinSilvia/GeDi
BugReports: https://github.com/AnnekathrinSilvia/GeDi/issues
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
biocViews:
GUI, GeneSetEnrichment, Software, Transcription, RNASeq,
Visualization, Clustering, Pathways, ReportWriting, GO, KEGG,
Reactome, ShinyApps
AnnekathrinSilvia
lshep
federicomarini
LiNk-NY
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