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(inactive) TENET3 #3363

Closed EthanNelson-Moore closed 3 months ago

EthanNelson-Moore commented 3 months ago

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

Confirm the following by editing each check box to '[x]'

I am familiar with the essential aspects of Bioconductor software management, including:

For questions/help about the submission process, including questions about the output of the automatic reports generated by the SPB (Single Package Builder), please use the #package-submission channel of our Community Slack. Follow the link on the home page of the Bioconductor website to sign up.

bioc-issue-bot commented 3 months ago

Dear @EthanNelson-Moore,

The package contains individual files over 5Mb in size. This is currently not allowed. Please remove the following from your repository:

data/consensus_open_chromatin_regions.rda
data/example_TENET_MultiAssayExperiment.rda
data/example_step1_make_external_datasets_GRanges_object.rda
data/gencode_v22_annotations.rda
data/gencode_v36_annotations.rda
data/public_enhancer_regions.rda
data/public_open_chromatin_regions.rda
data/public_promoter_regions.rda

If these are data files we suggest you look at AnnotationHub or ExperimentHub. Alternatively, it is often possible to illustrate package functionality with a smaller, subset of data.

When the files are removed it will be important to clean your git history of the large files. Please see the following instructions: Cleaning large files from git

I am closing this issue. Please try again with a new issue when resolved.