bioc-issue-bot
commented
3 months ago Hi @sdgamboa
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: bugphyzz
Title: A harmonized data resource and software for enrichment analysis of microbial physiologies
Version: 0.99.0
Authors@R:
c(
person(
given = "Samuel",
family = "Gamboa",
role = c("aut", "cre"),
email = "Samuel.Gamboa.Tuz@gmail.com",
comment = c(ORCID = "0000-0002-6863-7943")
),
person(
given = "Levi",
family = "Waldron",
role = c("aut"),
email = "levi.waldron@sph.cuny.edu",
comment = c(ORCID = "0000-0003-2725-0694")
),
person(
given = "Kelly",
family = "Eckenrode",
role = c("aut")
),
person(
given = "Jonathan",
family = "Ye",
role = c("aut")
),
person(
given = "Jennifer",
family = "Wokaty",
role = c("aut")
)
)
Description: bugphyzz is an electronic database of standardized microbial
annotations. It facilitates the creation of microbial signatures based on
shared attributes, which are utilized for bug set enrichment analysis. The
data also includes annotations imputed with ancestra state
reconstruction methods.
biocViews:
MicrobiomeData,
ReproducibleResearch
License: Artistic-2.0
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Depends:
R (>= 4.4)
Imports:
dplyr,
utils,
purrr,
stringr,
tidyr,
tidyselect,
BiocFileCache,
httr2,
tools
Suggests:
DT,
forcats,
ggplot2,
htmltools,
taxizedb,
knitr,
rmarkdown,
sessioninfo,
taxize,
testthat,
EnrichmentBrowser,
MicrobiomeBenchmarkData,
mia,
stats,
rlang,
limma,
mgsub,
methods,
readr,
crayon,
tibble,
magrittr,
tidytext,
BiocStyle
URL: https://github.com/waldronlab/bugphyzz
BugReports: https://github.com/waldronlab/bugphyzz/issues
lshep
sdgamboa
DarioS
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