bioc-issue-bot
commented
3 months ago Hi @sthawinke
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: smoppix
Type: Package
Title: Analyze Single Molecule Spatial Transcriptomics and Other Spatial Omics Data Using the Probabilistic Index
Version: 0.99.0
Authors@R:
c(person(given = "Stijn", family = "Hawinkel",
email = "stijn.hawinkel@psb.ugent.be",
role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Test for univariate and multivariate spatial patterns in
spatial omics data with single-molecule resolution. The tests implemented
allow for analysis of nested designs and are automatically calibrated to different
biological specimens. Tests for aggregation, colocalization, gradients and vicinity to cell edge or centroid are provided.
License: GPL-2
Encoding: UTF-8
Imports: spatstat.geom(>= 3.2.0),spatstat.random, methods,BiocParallel,SummarizedExperiment,SpatialExperiment,scam,Rdpack,stats,utils,extraDistr,lmerTest,lme4,ggplot2,graphics,grDevices,Rcpp (>= 1.0.11),Matrix,spatstat.model,openxlsx
Suggests: testthat,rmarkdown,knitr,DropletUtils,polyCub,RImageJROI,sp,ape
RdMacros: Rdpack
RoxygenNote: 7.3.1
biocViews: Transcriptomics, Spatial, SingleCell
Depends: R (>= 4.3.0)
VignetteBuilder: knitr
BugReports: https://github.com/sthawinke/smoppix
URL: https://github.com/sthawinke/smoppix
LinkingTo: Rcpp
lshep
sthawinke
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