bioc-issue-bot
commented
1 month ago Hi @nshen7
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: vmrseq
Type: Package
Title: Probabilistic Modeling of Single-cell Methylation Heterogeneity
Version: 0.99.0
Authors@R: person("Ning", "Shen", email = "ning.shen.wk@gmail.com",role = c("aut", "cre"))
Description: High-throughput single-cell measurements of DNA methylation allows studying inter-cellular epigenetic heterogeneity, but this task faces the challenges of sparsity and noise. We present vmrseq, a statistical method that overcomes these challenges and identifies variably methylated regions accurately and robustly.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
biocViews: Software, ImmunoOncology, DNAMethylation, Epigenetics, SingleCell,
Sequencing, WholeGenome
Depends:
R (>= 3.5.0)
Imports:
bumphunter,
dplyr,
BiocParallel,
DelayedArray,
GenomicRanges,
ggplot2,
methods,
tidyr,
locfit,
gamlss.dist,
recommenderlab,
HDF5Array,
data.table,
SummarizedExperiment,
IRanges,
S4Vectors
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/nshen7/vmrseq
BugReports: https://github.com/nshen7/vmrseq/issues
lshep
nshen7
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