bioc-issue-bot
commented
2 weeks ago Hi @baynec2
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: mspms
Type: Package
Title: Analysis tools for use with MSP-MS
Version: 0.99.0
Authors@R: person("Charlie", "Bayne", email = "baynec2@gmail.com",
role = c("aut", "cre"))
Description: This package provides functions for the analysis of data generated
by the multiplex substrate profiling by mass spectrometry for proteases
(MSP-MS) method.Data exported from upstream proteomics software is accepted
as input and subsequently normalized, outlier removed, and imputed.
Tools for statistical analysis, visualization, and interpretation of
the data are provided.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
Depends:
R (>= 4.1.0)
biocViews: Proteomics, MassSpectrometry
Imports:
dplyr (>= 1.1.4),
magrittr (>= 2.0.3),
MASS (>= 7.3.60.0.1),
NormalyzerDE (>= 1.19.7),
outliers (>= 0.15),
purrr (>= 1.0.2),
stats (>= 4.1.1),
tidyr (>= 1.3.1),
truncnorm (>= 1.0.9),
utils (>= 4.1.1),
ggplot2 (>= 3.5.0),
ggseqlogo (>= 0.2),
heatmaply (>= 1.5.0),
readr (>= 1.1.5),
readxl (>= 1.4.3),
rstatix (>= 0.7.2),
tibble (>= 3.2.1),
SummarizedExperiment (>= 1.24.0),
rlang (>= 1.1.3),
forcats (>= 1.0.0),
ggpubr (>= 0.6.0),
rmarkdown (>= 2.26),
DT (>= 0.33)
Suggests:
knitr,
testthat (>= 3.0.0)
Config/testthat/edition: 3
URL: https://github.com/baynec2/mspms
BugReports: https://github.com/baynec2/mspms/issues
VignetteBuilder: knitr
lshep
baynec2
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