Open Yunuuuu opened 3 months ago
Hi @Yunuuuu
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: eheat
Title: Extented ComplexHeatmap
Version: 0.99.0
Authors@R:
person("Yun", "Peng", , "yunyunp96@163.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2801-3332"))
Description: This package serves as a bridge between the ggplot2 and ComplexHeatmap packages. Essentially, all ggplot2 geometries and operations can be utilized in ComplexHeatmap.
URL: https://github.com/Yunuuuu/eheat
BugReports: https://github.com/Yunuuuu/eheat/issues
License: MIT + file LICENSE
biocViews: Software, Visualization
Encoding: UTF-8
Depends:
ComplexHeatmap,
ggplot2
Imports:
grid,
cli,
rlang (>= 1.1.0),
gtable,
tidyr,
methods,
tibble,
ggh4x
Suggests:
dplyr,
knitr,
rmarkdown
Collate:
'anno-.R'
'anno-subsettable-.R'
'eheat-package.R'
'ggheat.R'
'gganno.R'
'import-standalone-assert.R'
'import-standalone-cli.R'
'import-standalone-obj-type.R'
'prepare.R'
'utils-assert.R'
'utils-complexheatmap.R'
'utils-grid.R'
'utils.R'
ByteCompile: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1.9000
VignetteBuilder: knitr
Your package has been added to git.bioconductor.org to continue the pre-review process. A build report will be posted shortly. Please fix any ERROR and WARNING in the build report before a reviewer is assigned or provide a justification on why you feel the ERROR or WARNING should be granted an exception.
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Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: macOS 12.7.1 Monterey: eheat_0.99.0.tar.gz Linux (Ubuntu 22.04.3 LTS): eheat_0.99.0.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Received a valid push on git.bioconductor.org; starting a build for commit id: 39b1ec02d5993611b4004ddb81d277984411d225
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: macOS 12.7.1 Monterey: eheat_0.99.1.tar.gz Linux (Ubuntu 22.04.3 LTS): eheat_0.99.1.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Received a valid push on git.bioconductor.org; starting a build for commit id: 4e250ad17fff410d30a3c805d605fe039acf1496
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.3 LTS): eheat_0.99.2.tar.gz macOS 12.7.1 Monterey: eheat_0.99.2.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Received a valid push on git.bioconductor.org; starting a build for commit id: a64358824c51120997f1854ab226ed722d33d4bc
Received a valid push on git.bioconductor.org; starting a build for commit id: b64c61d094591724c434373a6e9f2d5dfb0934a0
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.3 LTS): eheat_0.99.3.tar.gz macOS 12.7.1 Monterey: eheat_0.99.3.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
On one or more platforms, the build results were: "WARNINGS". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: macOS 12.7.1 Monterey: eheat_0.99.4.tar.gz Linux (Ubuntu 22.04.3 LTS): eheat_0.99.4.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Received a valid push on git.bioconductor.org; starting a build for commit id: 5c0f6087d796353141a5825583010749de4122ca
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: macOS 12.7.1 Monterey: eheat_0.99.5.tar.gz Linux (Ubuntu 22.04.3 LTS): eheat_0.99.5.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Received a valid push on git.bioconductor.org; starting a build for commit id: 3c9f20d83c006e3e3cb39db212418e1d690df047
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: macOS 12.7.1 Monterey: eheat_0.99.6.tar.gz Linux (Ubuntu 22.04.3 LTS): eheat_0.99.6.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Received a valid push on git.bioconductor.org; starting a build for commit id: 782069f9c54d0850603e0d3b33a3f51f2f6cc7e9
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: Linux (Ubuntu 22.04.3 LTS): eheat_0.99.7.tar.gz macOS 12.7.1 Monterey: eheat_0.99.7.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
A reviewer has been assigned to your package for an indepth review. Please respond accordingly to any further comments from the reviewer.
Received a valid push on git.bioconductor.org; starting a build for commit id: fb5ff3381ed4f48f80758d67f9dfad2d68e974a1
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: macOS 12.7.1 Monterey: eheat_0.99.8.tar.gz Linux (Ubuntu 22.04.3 LTS): eheat_0.99.8.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Received a valid push on git.bioconductor.org; starting a build for commit id: 531d56b98f3bb61ee0ee899b6bf3be5ca136da42
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on the Bioconductor Single Package Builder.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
The following are build products from R CMD build on the Single Package Builder: macOS 12.7.1 Monterey: eheat_0.99.9.tar.gz Linux (Ubuntu 22.04.3 LTS): eheat_0.99.9.tar.gz
Links above active for 21 days.
Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
git@git.bioconductor.org:packages/eheat
to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.
Thanks for the submission. If you want the package to be hosted through Bioc, which is designated to biological data science, please address the points below. Most of these relate to the feeling that this could well be a CRAN package, which you might want to consider as an alternative.
[ ] Please consider implementing unit tests; we strongly encourage them!
[ ] In the README, please add Bioc installation instructions using
BiocManager::install()
.
We encourage the use of `r BiocStyle::Biocpkg("BiocStyle")` for formatting (see here).
[ ] Please replace installation instructions with ones using BiocManager::install()
.
[ ] You can hyperlink external packages using BiocStyle
functions, e.g., `r BiocStyle::CRANpkg("ggplot2")` and `r
BiocStyle::Biocpkg("ComplexHeatmap")` for packages hosted via CRAN and
Bioc, respectively.
[ ] The plots show up in quite bad resolution/pixelated when rendering the HTML. I am not 100% sure what is causing this, perhaps the chunk options at the top? Please try to resolve this.
[ ] The vignette is quite lengthy and includes many plots, long code chunks etc. It would help a lot to add more subheadings (included in the TOC) and notes on what each example is trying to achieve etc. to improve readability, rather than flying through dozens of examples without comment.
[ ] Can eheat
handle themes, e.g., changing text sizes? If so, please include examples in the docs/vignette because this is quite useful & more complicated to do using ComplexHeatmap
itself.
[ ] Bioc is focused on software for analysis of biological data. Please include biologically relevant example (rather than a toy matrix); see, e.g., ComplexHeatmap
docs which use bulk RNA-seq data to demo capabilities.
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
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[x] I understand Bioconductor Package Naming Policy and acknowledge Bioconductor may retain use of package name.
[x] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.
[x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
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