Open liangcheng-hrbmu opened 6 days ago
Hi @liangcheng-hrbmu
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: EnrichDO
Type: Package
Title: Disease ontology annotation and enrichment analysis
Version: 0.99.0
Author: c(person(given="Haixiu",family="Yang",email="yanghaixiu@ems.hrbmu.edu.cn",role=c("aut")),
person(given="Hongyu",family="Fu",email="15736262010@163.com",role=c("cre"))
)
Maintainer: Liang Cheng <liangcheng@hrbmu.edu.cn>
Description: This package combines topological properties of
disease ontology structure to implement disease ontology
enrichment analysis.Enrichment analyses including a variety
of statistical models and visualization schemes for discovering
the disease-gene relationship under biological big data.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: BiocGenerics, RColorBrewer, Rgraphviz, clusterProfiler,
dplyr, ggplot2, graph, magrittr, methods, pheatmap,
purrr, readr, stringr, tidyr
biocViews: Annotation, Visualization,
GeneSetEnrichment, Software
Depends:
R (>= 3.5.0)
RoxygenNote: 7.3.1
Suggests:
knitr,
rmarkdown
VignetteBuilder: knitr
Can you please expand the abstract/introduction in your vignette that provides motivation for inclusion in Bioconductor and when appropriate a review and comparison to existing Bioconductor packages with similar functionality or scope. Is it possible to show interoperability with any existing Bioconductor infrastructure classes?
The data in Meta
should be moved to an official recognized directory, either data
or inst/extdata
and if in inst/extdata
there should be an inst/script
that describes the data, how it was created, source information, etc.
Can you please expand the abstract/introduction in your vignette that provides motivation for inclusion in Bioconductor and when appropriate a review and comparison to existing Bioconductor packages with similar functionality or scope. Is it possible to show interoperability with any existing Bioconductor infrastructure classes?
The data in
Meta
should be moved to an official recognized directory, eitherdata
orinst/extdata
and if ininst/extdata
there should be aninst/script
that describes the data, how it was created, source information, etc.
We have modified the uploaded package according to your suggestion.
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
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[x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
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