bioc-issue-bot
commented
1 month ago Hi @thsadiq
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The DESCRIPTION file for this package is:
Package: scoup
Version: 0.99.0
Date: 2024-07-31
License: GPL (>= 2)
Authors@R: c(person("Hassan", "Sadiq", role=c("aut","cre","cph"),
email="hassan.t.sadiq@gmail.com",
comment=c(ORCID="0000-0003-0192-7134")))
Description: An elaborate population genetics framework that facilitates
straightforward simulation of codon genetic sequences
subjected to different degrees and/or patterns of Darwinian
selection. The evolutionary framework was built upon the
fitness landscape paradigm of Sewall Wright, as popularised
by the mutation-selection model of Halpern and Bruno. This
enabled realistic evolutionary settings of living organisms
to be included seamlessly. For example, an
Ornstein-Uhlenbeck algorithm inspired fitness update
approach is incorporated herein. Otherwise complex
biological processes, such as the effect of the interplay
between genetic drift and mutation on diversifying selection,
may now be investigated with minimal effort.
Frequency-dependent and deterministic selection coefficients
update techniques are also available.
Depends: R (>= 4.4.1), Matrix
Suggests: BiocManager, BiocStyle, bookdown, htmltools, knitr, yaml
VignetteBuilder: knitr
biocViews: Alignment, Classification, ComparativeGenomics, Genetics,
MathematicalBiology, ResearchField, Software, StatisticalMethod,
WorkflowStep
Title: Codon Simulator with Darwinian Selection Modelled as an OU Process
Contact: <hassan.t.sadiq@gmail.com>
URL: https://github.com/thsadiq/scoup
BugReports: https://github.com/thsadiq/scoup/issues
Packaged: 2024-07-31 23:59:59 UTC; hassan
Repository: Bioconductor
lshep
thsadiq
jianhong
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