bioc-issue-bot
commented
2 months ago Hi @hks5august
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: CPSM
Type: Package
Title: CPSM: Cancer patient survival model
Version: 0.99.0
Authors@R: c(person("Harpreet", "Kaur", email = "hks04180@gmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-0421-8341")),
person("Pijush", "Das", email = "topijush@gmail.com",
role = c("aut")),
person("Uma", "Shankavaram" , email = "uma@mail.nih.gov",
role = c("aut")))
Description: The CPSM package provides a comprehensive computational pipeline
for predicting the survival probability of cancer patients. It
offers a series of steps including data processing, splitting
data into training and test subsets, and normalization of data.
The package enables the selection of significant features based on
univariate survival analysis and generates a LASSO prognostic
index score. It supports the development of predictive models for
survival probability using various features and provides
visualization tools to draw survival curves based on predicted
survival probabilities. Additionally, SPM includes functionalities
for generating bar plots that depict the predicted mean and median
survival times of patients, making it a versatile tool for
survival analysis in cancer research.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Imports:
SummarizedExperiment,
grDevices,
Rcpp ,
MASS ,
dplyr ,
reshape2 ,
survival ,
survminer ,
ggplot2 ,
MTLR ,
SurvMetrics ,
pec ,
glmnet ,
ggfortify ,
rms ,
preprocessCore ,
survivalROC ,
ROCR ,
Hmisc ,
Matrix ,
svglite,
stats,
utils
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0)
URL: https://github.com/hks5august/CPSM/
BugReports: https://github.com/hks5august/CPSM/issues
VignetteBuilder: knitr
Config/testthat/edition: 3
biocViews: GeneExpression, Normalization
lshep
hks5august
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