bioc-issue-bot
commented
3 weeks ago Hi @TylerSagendorf
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: TMSig
Type: Package
Title: Tools for Molecular Signatures
Version: 0.99.0
Date: 2024-08-23
Authors@R:
c(
person(given = "Tyler", family = "Sagendorf",
email = "tyler.sagendorf@pnnl.gov",
comment = c(ORCID = "0000-0003-1552-4870"),
role = c("aut", "cre")),
person(given = "Di", family = "Wu", role = "ctb"),
person(given = "Gordon", family = "Smyth", role = "ctb")
)
Description: The TMSig package contains tools to prepare, analyze, and visualize
named lists of sets, with an emphasis on molecular signatures (such as gene
or kinase sets). It includes fast, memory efficient functions to construct
sparse incidence and similarity matrices and filter, cluster, invert, and
decompose sets. Additionally, bubble heatmaps can be created to visualize
the results of any differential or molecular signatures analysis.
License: GPL (>= 3)
URL: https://github.com/EMSL-Computing/TMSig
BugReports: https://github.com/EMSL-Computing/TMSig/issues
Encoding: UTF-8
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
biocViews: Clustering, GeneSetEnrichment, GraphAndNetwork, Pathways, Visualization
Depends:
R (>= 4.4.0),
limma
Imports:
circlize,
ComplexHeatmap,
data.table,
grDevices,
grid,
lifecycle,
Matrix,
stats,
utils
Suggests:
BiocStyle,
knitr,
rmarkdown,
testthat (>= 3.0.0)
Config/testthat/edition: 3
lshep
TylerSagendorf
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