bioc-issue-bot
commented
2 months ago Hi @AlmogAngel
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: xCell2
Type: Package
Title: A Tool for Generic Cell Type Enrichment Analysis
Version: 0.99.0
Authors@R:
c(person(given = "Almog",
family = "Angel",
role = c("aut", "cre"),
email = "almog.angel@campus.technion.ac.il",
comment = c(ORCID = "0009-0001-3297-6935")))
Description: xCell2 provides methods for cell type enrichment analysis using cell type signatures.
It includes three main functions -
1. xCell2Train for training custom references objects from bulk or single-cell RNA-seq datasets.
2. xCell2Analysis for conducting the cell type enrichment analysis using the custom reference.
3. xCell2GetLineage for identifying dependencies between different cell types using ontology.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: false
Depends:
R (>= 4.4.0)
biocViews: GeneExpression, Transcriptomics, Microarray, RNASeq, SingleCell, DifferentialExpression, ImmunoOncology, GeneSetEnrichment
Imports:
Rfast,
singscore,
ontoProc (>= 1.26.4),
ontologyIndex,
tibble,
dplyr,
BiocParallel,
Matrix,
minpack.lm,
pracma,
methods,
readr,
tidyr
Suggests:
devtools,
knitr,
rmarkdown,
testthat
RoxygenNote: 7.3.2
VignetteBuilder: knitr
URL: https://github.com/AlmogAngel/xCell2
BugReports: https://github.com/AlmogAngel/xCell2/issues
lshep
AlmogAngel
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