bioc-issue-bot
commented
1 month ago Hi @anna-bortolato
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: MOSClip
Title: Multi Omics Survival Clip
Version: 0.99.0
Depends: R (>= 4.4.0)
Authors@R: c(
person(given = "Paolo", family = "Martini", role = c("aut", "cre"),
email = "paolo.martini@unibs.it",
comment = c(ORCID = "0000-0002-0146-1031")),
person(given = "Anna", family = "Bortolato", role = c("aut"),
email = "anna.bortolato@unipd.it",
comment = c(ORCID = "0009-0009-9327-6084")),
person(given = "Anna", family = "Tanada", role = c("aut"),
email = "annacarolinaemi.delimatanada@phd.unipd.it",
comment = c(ORCID = "0000-0003-3224-0538")),
person(given = "Enrica", family = "Calura", role = c("aut"),
email = "enrica.calura@unipd.it",
comment = c(ORCID = "0000-0001-8463-2432")),
person(given = "Stefania", family = "Pirrotta", role = c("aut"),
email = "stefania.pirrotta@phd.unipd.it",
comment = c(ORCID = "0009-0004-0030-217X")),
person(given = "Federico", family = "Agostinis", role = c("aut"),
email = "federico.agostinis@outlook.com")
)
Description: Allows to combine multiple omics dimension to perform pathway survival or two-class analysis. There are two main mode: pathway tests and module tests. The latter method allows the user to dig inside the pathways itself.
License: AGPL-3
Imports: MultiAssayExperiment, methods, survminer, graph,
graphite, AnnotationDbi, checkmate, ggplot2, gridExtra, igraph,
pheatmap, survival, RColorBrewer, SuperExactTest,
reshape, NbClust, S4Vectors, grDevices, graphics, stats, utils,
ComplexHeatmap, FactoMineR, circlize, corpcor, coxrobust,
elasticnet, gRbase, ggplotify, qpgraph, org.Hs.eg.db, Matrix
Suggests: RUnit, BiocGenerics, MASS, BiocStyle, knitr, EDASeq, rmarkdown, kableExtra, testthat (>= 3.0.0)
Encoding: UTF-8
LazyData: false
biocViews: Software, StatisticalMethod, GraphAndNetwork, Survival, Regression, DimensionReduction, Pathways, Reactome
BugReports: https://github.com/cavei/MOSClip/
URL: https://github.com/cavei/MOSClip
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Kayla-Morrell
anna-bortolato
lshep
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