bioc-issue-bot
commented
1 month ago Hi @bhuvad
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: SpaNorm
Title: Spatially-aware normalisation for spatial transcriptomics data
Version: 0.99.0
Authors@R: c(
person(given = "Agus",
family = "Salim",
role = c("aut"),
email = "salim.a@unimelb.edu.au",
comment = c(ORCID = "0000-0003-3999-7701")),
person(given = "Dharmesh D.",
family = "Bhuva",
role = c("aut", "cre"),
email = "dharmesh.bhuva@adelaide.edu.au",
comment = c(ORCID = "0000-0002-6398-9157"))
)
Description: This package implements the spatially aware library size normalisation algorithm, SpaNorm. SpaNorm normalises out library size effects while retaining biology through the modelling of smooth functions for each effect. Normalisation is performed in a gene- and cell-/spot- specific manner, yielding library size adjusted data.
License: GPL (>= 3)
Encoding: UTF-8
LazyDataCompression: bzip2
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews: Software, GeneExpression, Transcriptomics, Spatial
Depends:
R (>= 4.4)
Imports:
edgeR,
Matrix,
matrixStats,
methods,
scran,
Seurat,
SeuratObject,
SingleCellExperiment,
SpatialExperiment,
stats,
SummarizedExperiment,
S4Vectors,
utils
Suggests:
testthat (>= 3.0.0),
knitr,
rmarkdown,
prettydoc,
pkgdown,
covr,
BiocStyle,
ggplot2,
patchwork
URL: https://bhuvad.github.io/SpaNorm
BugReports: https://github.com/bhuvad/SpaNorm/issues
VignetteBuilder: knitr
Config/testthat/edition: 3
LazyData: true
vjcitn
bhuvad
lshep
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