bioc-issue-bot
commented
1 month ago Hi @sgunz
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: sosta
Title: A package for the analysis of anatomical tissue structures in spatial omics data
Version: 0.99.0
Authors@R: c(
person("Samuel", "Gunz", , "samuel.gunz@uzh.ch", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-8909-0932")),
person("Mark D.", "Robinson", role=c("aut", "fnd"),
email="mark.robinson@mls.uzh.ch"))
Description: `sosta` (Spatial Omics STructure Analysis) is a package for analyzing
spatial omics data to explore tissue organization at the anatomical structure level.
It reconstructs morphologically relevant structures based on molecular features
or cell types. It further calculates a range of structural and shape metrics
to quantitatively describe tissue architecture. The package is designed to integrate
with other packages for the analysis of spatial (omics) data.
License: GPL (>= 3) + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/sgunz/sosta, https://sgunz.github.io/sosta/
BugReports: https://github.com/sgunz/sosta/issues
biocViews: Software, Spatial, Transcriptomics, Visualization
Imports:
terra,
sf,
smoothr,
spatstat.explore,
spatstat.geom,
SpatialExperiment,
dplyr,
ggplot2,
patchwork,
SummarizedExperiment,
stats,
rlang
Suggests:
knitr,
rmarkdown,
ggspavis,
BiocStyle,
imcdatasets,
ggfortify,
tidyr
VignetteBuilder: knitr
jianhong
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