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(inactive) bamSliceR: Slicing and Tallied BAMs from GDC and local for Variants Analysis #3586

Closed huangyizR closed 1 month ago

huangyizR commented 1 month ago

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

Confirm the following by editing each check box to '[x]'

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For questions/help about the submission process, including questions about the output of the automatic reports generated by the SPB (Single Package Builder), please use the #package-submission channel of our Community Slack. Follow the link on the home page of the Bioconductor website to sign up.

bioc-issue-bot commented 1 month ago

Dear @huangyizR,

The package contains individual files over 5Mb in size. This is currently not allowed. Please remove the following from your repository:

inst/extdata/02H060.RNAseq.gencode.v36.minimap2.sorted.bam
inst/extdata/04H138.RNAseq.gencode.v36.minimap2.sorted.bam
inst/extdata/TARGET_AML_VRforVEP_vep.vcf
inst/extdata/tallied_reads_example.rds

If these are data files we suggest you look at AnnotationHub or ExperimentHub. Alternatively, it is often possible to illustrate package functionality with a smaller, subset of data.

When the files are removed it will be important to clean your git history of the large files. Please see the following instructions: Cleaning large files from git

I am closing this issue. Please try again with a new issue when resolved.