bioc-issue-bot
commented
1 day ago Hi @daewoooo
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: SVbyEye
Title: Visualization of genomic structural variants
Version: 0.99.0
Authors@R:
person(given = "David",
family = "Porubsky",
role = c("aut", "cre"),
email = "david.porubsky@gmail.com",
comment = c(ORCID = "0000-0001-8414-8966"))
Description: SVbyEye is an implements functions to detect and visualize genomic structural variation between two and multiple sequences.
To achieve this, SVbyEye introduces 4 new ggplot2 geoms (geom_miropeats(), geom_arrowhead(), geom_roundrect(), and geom_wide_arc()) together
with a number of other functions simplify oparations on FASTA alignments reported PAF format. A number of wrapper functions allows user to
produce near publication ready figures.
Depends:
R (>= 4.3.0)
Imports:
ggplot2 (>= 3.4.0),
ggnewscale,
ggforce,
gggenes,
scales,
grid,
stats,
dplyr,
stringr,
magrittr,
data.table,
S4Vectors,
methods,
tibble,
utils,
BSgenome,
GenomicRanges,
GenomicAlignments (>= 1.34.0),
Biostrings,
IRanges,
GenomeInfoDb,
Rsamtools,
wesanderson,
randomcoloR
Suggests:
BSgenome.Hsapiens.UCSC.hg38,
BiocStyle,
testthat,
knitr,
gtools,
rmarkdown
License: MIT + file LICENSE
Encoding: UTF-8
LazyLoad: yes
VignetteBuilder: knitr
biocViews: Software, GenomicVariation, StructuralVariation, VariantDetection, GenomeAnnotation, ComparativeGenomics, Sequencing, WholeGenome
URL: https://github.com/daewoooo/SVbyEye
BugReports: https://github.com/daewoooo/SVbyEye/issues
RoxygenNote: 7.3.2
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[x ] I understand Bioconductor Package Naming Policy and acknowledge Bioconductor may retain use of package name.
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[x ] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
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