bioc-issue-bot
commented
1 month ago Hi @Gionmattia
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: terapadog
Type: Package
Title: Translational Efficiency Regulation Analysis using the PADOG Method
Version: 0.99.0
Authors@R: person("Gionmattia", "Carancini",
email = "gionmattia@gmail.com",
role = c("cre", "aut"),
comment = c(ORCID = "0000-0001-7936-4883"))
Description: This package performs a Gene Set Analysis with the approach adopted
by PADOG on the genes that are reported as translationally regulated
(ie. exhibit a significant change in TE) by the DeltaTE package.
It can be used on its own to see the impact of translation regulation on
gene sets, but it is also integrated as an additional analysis method
within ReactomeGSA, where results are further contextualised in terms of
pathways and directionality of the change.
License: GPL-2
Encoding: UTF-8
LazyData: TRUE
Imports: DESeq2, KEGGREST, stats, utils, dplyr, plotly, htmlwidgets, biomaRt, methods
Suggests: apeglm, BiocStyle, knitr, rmakrkdown
Collate: preprocessing_helpers.R id_converter.R prepareTerapadogData.R terapadog.R get_FCs.R assign_Regmode.R plotDTA.R
biocViews: RiboSeq, Transcriptomics, GeneSetEnrichment, GeneRegulation,
Reactome, Software
RoxygenNote: 7.3.2
VignetteBuilder: knitr
lshep
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