bioc-issue-bot
commented
2 hours ago Hi @GilbertHan1011
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: linkSet
Title: Base Classes for Storing Genomic Link Data
Version: 0.99.0
Authors@R:
person("Gilbert", "Han", , "GilbertHan1011@gmail.com", role = c("aut", "cre"),
comment = c(ORCID = "0009-0000-0293-2467"))
Description: The goal of linkSet is to provide tools for working with gene-enhancer interactions, which is commonly seen in HiC, PC-HiC, and single-cell ATAC-seq data analysis.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends:
GenomicRanges,
R (>= 2.10)
Imports:
methods,
Matrix,
S4Vectors,
IRanges,
GenomeInfoDb,
BiocGenerics,
Organism.dplyr,
InteractionSet,
ggplot2,
patchwork,
scales,
dplyr,
foreach,
iterators,
stats,
rlang,
MASS,
data.table
Suggests:
knitr,
rmarkdown,
testthat,
TxDb.Mmusculus.UCSC.mm10.knownGene,
org.Mm.eg.db,
GenomicFeatures,
gamlss,
gamlss.tr
Collate: class.R AllGenerics.R getset.R
methods.R annotate.R distance.R formatConverter.R
linkSet-package.R GRange_method.R test_helper.R
visualization.R count.R statical.R
biocViews: Software, HiC, DataRepresentation
URL: https://github.com/GilbertHan1011/linkSet, https://gilberthan1011.github.io/linkSet, https://gilberthan1011.github.io/linkSet/
BugReports: https://github.com/GilbertHan1011/linkSet/issues/new
LazyData: true
VignetteBuilder: knitr
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