bioc-issue-bot
commented
2 weeks ago Hi @hamy12398
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: scHiCcompare
Title: Differential Analysis of Single-cell Hi-C Data
Version: 0.99.0
Authors@R: c(
person(given = "My", family = "Nguyen",
email = "nguyenm21@vcu.edu",
role = c("aut"),
comment = c(ORCID = "0009-0003-1118-7085")),
person(given = "Mikhail",
family = "Dozmorov",
role = c("aut", "cre"),
email = "mikhail.dozmorov@gmail.com",
comment = c(ORCID = "0000-0002-0086-8358")))
Description: This package provides functions for differential chromatin interaction analysis
between two single-cell Hi-C data groups. It includes tools for imputation, normalization,
and differential analysis of chromatin interactions. The package implements pooling techniques
for imputation and offers methods to normalize and test for differential interactions across
single-cell Hi-C datasets.
Imports:
DT,
data.table,
dplyr,
ggplot2,
gtools,
HiCcompare,
lattice,
mclust,
mice,
miceadds,
rstatix,
tidyr,
gridExtra
Suggests: knitr,
rmarkdown,
testthat,
BiocStyle
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.2
Depends: R (>= 4.2.0)
VignetteBuilder: knitr
biocViews: Software, SingleCell, HiC, Sequencing, Normalization
BugReports: https://github.com/dozmorovlab/ScHiCcompare/issues
URL: https://github.com/dozmorovlab/ScHiCcompare
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