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MODA #37

Closed fairmiracle closed 8 years ago

fairmiracle commented 8 years ago

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

Confirm the following by editing each check box to '[x]'

I am familiar with the essential aspects of Bioconductor software management, including:

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bioc-issue-bot commented 8 years ago

Hi @fairmiracle

Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: MODA
Type: Package
Title: MODA: MOdule Differential Analysis for weighted gene
        co-expression network
Version: 0.99.4
Date: 2016-06-22
Author: Dong Li, James B. Brown, Luisa Orsini, Zhisong Pan, Guyu Hu and Shan He
Maintainer: Dong Li <dxl466@cs.bham.ac.uk>
Description: MODA can be used to estimate and construct condition-specific gene
    co-expression networks, and identify differentially expressed subnetworks as
    conserved or condition specific modules which are potentially associated with
    relevant biological processes.
License: GPL (>= 2)
Depends: R (>= 3.1.0)
Imports: WGCNA,dynamicTreeCut,igraph
RoxygenNote: 5.0.1
biocViews: GeneExpression, Microarray, DifferentialExpression, Network
Suggests: BiocStyle
mtmorgan commented 8 years ago

@fairmiracle can you clarify the relationship between this package and AMOUNTAIN? Are they to be considered two independent software packages?

mtmorgan commented 8 years ago

This package is already under review in the original tracker. I'm closing this issue.

fairmiracle commented 8 years ago

Yes, they are two different packages. Both of them were initially submitted to the old system tracker before, MODA has been assigned to Martin and AMOUNTAIN to Dan. It seems that I should not open new issues for them since they are under review now. Sorry about the usage of new system.

Best regards,

Dong

Dong Li PhD student at School of Computer Science The University of Birmingham, UK

On 28 June 2016 at 21:28, Martin Morgan notifications@github.com wrote:

@fairmiracle https://github.com/fairmiracle can you clarify the relationship between this package and AMOUNTAIN? Are they to be considered two independent software packages?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Bioconductor/Contributions/issues/37#issuecomment-229172632, or mute the thread https://github.com/notifications/unsubscribe/AI7Vn5z73r5bzNGagAn6YJiBzr86gGelks5qQYPtgaJpZM4JAfKB .

fairmiracle commented 8 years ago

Hi Martin

How to update these two packages? Still through the old tracker?

Best regards,

Dong

Dong Li PhD student at School of Computer Science The University of Birmingham, UK

On 28 June 2016 at 21:30, Martin Morgan notifications@github.com wrote:

This package is already under review in the original tracker. I'm closing this issue.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Bioconductor/Contributions/issues/37#issuecomment-229173368, or mute the thread https://github.com/notifications/unsubscribe/AI7Vn6RCsgp8jjy9EJwS5JkETSf-QUuLks5qQYR7gaJpZM4JAfKB .

mtmorgan commented 8 years ago

yes increment the version number (to 0.99.5) and update the existing issue on the old tracker