bioc-issue-bot
commented
7 years ago Hi @ronammar
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: zFPKM
Title: A suite of functions to facilitate zFPKM transformations
Version: 0.99.0
Authors@R:
c(
person("Ron", "Ammar", role = c("aut", "cre"), email = "ron.ammar@bms.com"),
person("John", "Thompson", role = "aut", email = "john.thompson@bms.com")
)
Description: Perform the zFPKM transform on RNA-seq FPKM data. This algorithm
is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference
recommends using zFPKM > -3 to select expressed genes. Validated with encode
open/closed chromosome data. Works well for gene level data using FPKM or TPM.
Does not appear to calibrate well for transcript level data.
License: GPL-3 | file LICENSE
URL: https://github.com/ronammar/zFPKM/
BugReports: https://github.com/ronammar/zFPKM/issues
Imports: checkmate, dplyr, ggplot2, tidyr
Suggests: knitr
VignetteBuilder: knitr
biocViews: RNASeq, FeatureExtraction, Software, GeneExpression
LazyData: true
RoxygenNote: 6.0.1
mtmorgan
ronammar
LiNk-NY
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
Confirm the following by editing each check box to '[x]'
[x] I understand that by submitting my package to Bioconductor, the package source and all review commentary are visible to the general public.
[x] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.
[x] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.
[x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
[x] I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, responding promptly to requests for updates from the Core team in response to changes in R or underlying software.
I am familiar with the essential aspects of Bioconductor software management, including:
For help with submitting your package, please subscribe and post questions to the bioc-devel mailing list.