bioc-issue-bot
commented
6 years ago Hi @JokingHero
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: ORFik
Type: Package
Title: Open Reading Frames in Genomics
Version: 0.99.0
Authors@R: c(
person(given = "Kornel", family = "Labun", email = "kornellabun@gmail.com", role = c("aut", "cre", "cph")),
person(given = "Haakon", family = "Tjeldnes", email = "hauken_heyken@hotmail.com", role = c("aut", "dtc")),
person(given = "Katazyna", family = "Chyzynska", email = "katchyz@gmail.com", role = c("ctb", "dtc")),
person(given = "Evind", family = "Valen", email = "eivind.valen@gmail.com", role = c("ths", "fnd")) )
Description: Tools for manipulation of RiboSeq, RNASeq and CageSeq data. ORFik
is extremely fast through use of C, data.table and GenomicRanges. Package
allows to reassign starts of the transcripts with the use of CageSeq data,
automatic shifting of RiboSeq reads, finding of Open Reading Frames for the
whole genomes and many more.
biocViews: Software, Sequencing, RiboSeq, RNASeq, FunctionalGenomics, Coverage, Alignment, DataImport
License: MIT + file LICENSE
LazyData: TRUE
BugReports: https://github.com/JokingHero/ORFik/issues
URL: https://github.com/JokingHero/ORFik
Depends:
R (>= 3.5.0),
IRanges (>= 2.13.28),
GenomicRanges (>= 1.31.23),
GenomicAlignments (>= 1.15.13)
Imports:
S4Vectors (>= 0.17.39),
GenomeInfoDb (>= 1.15.5),
GenomicFeatures (>= 1.31.10),
rtracklayer (>= 1.39.9),
Rcpp (>= 0.12.16),
data.table (>= 1.10.4-3),
Biostrings (>= 2.47.12),
stats,
tools,
Rsamtools (>= 1.31.3)
RoxygenNote: 6.0.1
Suggests:
testthat,
rmarkdown,
knitr,
BiocStyle,
BSgenome,
BSgenome.Hsapiens.UCSC.hg19,
ggplot2 (>= 2.2.1)
LinkingTo: Rcpp
VignetteBuilder: knitr
JokingHero
Roleren
nturaga
lawremi
lshep
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
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[ x ] I understand that by submitting my package to Bioconductor, the package source and all review commentary are visible to the general public.
[ x ] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.
[ x ] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.
[ x ] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
[ x ] I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, responding promptly to requests for updates from the Core team in response to changes in R or underlying software.
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