(inactive) qckitfastq

[winnie0521]

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

• Repository: https://github.com/compbiocore/qckitfastq

Confirm the following by editing each check box to '[x]'

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[aguang]

@hpages I will add the reference links and work on disabling adapter_content() for Windows. With regards to the commas usage in the References, it is automatic from RMarkdown and follows the Chicago author-date format. I didn't see any inconsistencies in the references. Are you referring to the fact that the first author is shown as 'last name, first name' while subsequent authors are shown as 'first name last name'? If so that is consistent with Chicago style. I can change it to another style but didn't see anything in the Bioconductor documentation about it. Let me know if there is a specific style I should use instead.

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

4d2e112 removed map and added some ifdef guards for Window... 4a2ff3d disabled adapter functions for Windopws e07d8e2 modified configure.sh bf1092b update version

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR, WARNINGS". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

5030bf6 configure.win 8efe35b configure.win

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

373bb1f update version:

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings on all platforms.

Please see the build report for more details.

[aguang]

@hpages I disabled adapter_content for qckitfastq Windows as well as disabled some functionality for RSeqAn for Windows as well. Let me know if this solution works for you.

[hpages]

Hi @aguang ,

Thanks for teaching me about the Chicago style. Everything looks good now. Thanks for all your hard work on qckitfastq.

Cheers, H.

[bioc-issue-bot]

Your package has been accepted. It will be added to the Bioconductor Git repository and nightly builds. Additional information will be posed to this issue in the next several days.

Thank you for contributing to Bioconductor!

[mtmorgan]

The master branch of your GitHub repository has been added to Bioconductor's git repository.

To use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/winnie0521.keys is not empty), then no further steps are required. Otherwise, do the following:

1. Add an SSH key to your github account
2. Submit your SSH key to Bioconductor

See further instructions at

https://bioconductor.org/developers/how-to/git/

for working with this repository. See especially

https://bioconductor.org/developers/how-to/git/new-package-workflow/ https://bioconductor.org/developers/how-to/git/sync-existing-repositories/

to keep your GitHub and Bioconductor repositories in sync.

Your package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at

https://bioconductor.org/checkResults/

(Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using BiocManager::install("qckitfastq"). The package 'landing page' will be created at

https://bioconductor.org/packages/qckitfastq

If you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further.