bioc-issue-bot
commented
5 years ago Hi @biodavidjm
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: artMS
Title: Analytical R tools for Mass Spectrometry
Version: 0.0.0.2018
Authors@R: c(
person("David", "Jimenez-Morales", email = "biodavidjm@gmail.com",
role = c("aut", "cre", "cph")),
person("John", "Von Dollen", email = "john.vondollen@ucsf.edu",
role = c("aut")),
person("Alexandre", "Rosa Campos", email = "arosacampos@sbpdiscovery.org",
role = c("aut"))
)
Maintainer: David Jimenez-Morales <biodavidjm@gmail.com>
Description: artMS provides a set of tools for the analysis of proteomics
label-free datasets. It takes as input the MaxQuant search result
output (evidence.txt file) and performs quality control,
relative quantification using MSstats, and downstream analysis
and integration. artMS also provides a set of functions to re-format
and make it compatible with other analytical tools,
including MIST, SAINT, and CompPASS.
License: GPL-3
URL: https://github.com/biodavidjm/artMS
BugReports: https://github.com/biodavidjm/artMS/issues
Depends: R (>= 3.5.0)
Imports:
biomaRt,
bit64,
ComplexHeatmap,
corrplot,
data.table,
ggdendro,
getopt,
ggplot2,
graphics,
grDevices,
grid,
limma,
MSstats,
org.Hs.eg.db,
pheatmap,
plotly,
plyr,
RColorBrewer,
reshape2,
seqinr,
stats,
shiny,
stringr,
utils,
VennDiagram,
yaml
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Roxygen: list(markdown = TRUE)
Suggests: knitr,
rmarkdown,
testthat
VignetteBuilder: knitr
mtmorgan
biodavidjm
LiNk-NY
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