bioc-issue-bot
commented
5 years ago Closed dkorandla closed 5 years ago
bioc-issue-bot
commented
5 years ago 
dkorandla
commented
5 years ago My package is ready for a final review. I have taken care of all the straightforward warnings, and the AssessGenes function now supports both GRanges input and my method of input.
Here is my 'AdditionalPackage': https://github.com/DRK248/AssessORFData
I still need to connect my software package to my data package, and I will do this in a new build after the final review. Currently, I just plan on having each package suggest the other. Let me know if I should link the two packages in another way.
bioc-issue-bot
commented
5 years ago Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the build report for more details.
dkorandla
commented
5 years ago AdditionalPackage: https://github.com/DRK248/AssessORFData
bioc-issue-bot
commented
5 years ago Hi @DRK248,
Starting build on additional package https://github.com/DRK248/AssessORFData.
IMPORTANT: Please read the instructions for setting up a push hook on your repository, or further changes to your additional package repository will NOT trigger a new build.
The DESCRIPTION file of this additional package is:
Package: AssessORFData
Type: Package
Title: Data and Files for the AssessORF Package
Version: 0.99.1
Authors@R: person("Deepank", "Korandla", email = "dkorandl@andrew.cmu.edu", role = c("aut", "cre"))
Description: This package provides access to mapping and results objects generated by the AssessORF
package, as well as the genome sequences for the strains corresponding to those objects.
Depends: R (>= 3.5.0)
Imports: DECIPHER, utils
Suggests: AssessORF, BiocStyle, knitr, rmarkdown
biocViews: OrganismData, Bacillus_subtilis_Data, Escherichia_coli_Data, Pseudomonas_aeruginosa_Data,
Staphylococcus_aureus_Data, Genome, Proteome, SequencingData
License: GPL-3
Encoding: UTF-8
LazyData: FALSE
NeedsCompilation: no
RoxygenNote: 6.1.0
VignetteBuilder: knitr
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
mtmorgan
commented
5 years ago Please remove the .R and .html files from AssessORFData/vignettes
bioc-issue-bot
commented
5 years ago Received a valid push; starting a build. Commits are:
b49de51 Update DESCRIPTION
bioc-issue-bot
commented
5 years ago Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
Congratulations! The package built without errors or warnings on all platforms.
Please see the build report for more details.
bioc-issue-bot
commented
5 years ago Your package has been accepted. It will be added to the Bioconductor Git repository and nightly builds. Additional information will be posed to this issue in the next several days.
Thank you for contributing to Bioconductor!
mtmorgan
commented
5 years ago The master branch of your GitHub repository has been added to Bioconductor's git repository.
To use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/DRK248.keys is not empty), then no further steps are required. Otherwise, do the following:
See further instructions at
https://bioconductor.org/developers/how-to/git/
for working with this repository. See especially
https://bioconductor.org/developers/how-to/git/new-package-workflow/ https://bioconductor.org/developers/how-to/git/sync-existing-repositories/
to keep your GitHub and Bioconductor repositories in sync.
Your package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at
https://bioconductor.org/checkResults/
(Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using BiocManager::install(\"AssessORF\"). The package 'landing page' will be created at
https://bioconductor.org/packages/AssessORF
If you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further.
mtmorgan
commented
5 years ago The master branch of your GitHub repository has been added to Bioconductor's git repository.
To use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/DRK248.keys is not empty), then no further steps are required. Otherwise, do the following:
See further instructions at
https://bioconductor.org/developers/how-to/git/
for working with this repository. See especially
https://bioconductor.org/developers/how-to/git/new-package-workflow/ https://bioconductor.org/developers/how-to/git/sync-existing-repositories/
to keep your GitHub and Bioconductor repositories in sync.
Your package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at
https://bioconductor.org/checkResults/
(Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using BiocManager::install(\"AssessORFData\"). The package 'landing page' will be created at
https://bioconductor.org/packages/AssessORFData
If you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further.
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