bioc-issue-bot
commented
6 years ago Hi @kkrismer
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: transite
Title: RNA-binding protein motif analysis
Version: 0.99.0
Authors@R:
c(person(given = "Konstantin",
family = "Krismer",
role = c("aut", "cre", "cph"),
email = "krismer@mit.edu",
comment = c(ORCID = "0000-0001-8994-3416")),
person(given = "Anna",
family = "Gattinger",
role = "aut",
email = "anna.gattinger@risc-software.at",
comment = c(ORCID = "0000-0001-7094-9279")),
person(given = "Michael",
family = "Yaffe",
role = c("ths", "cph"),
email = "myaffe@mit.edu",
comment = c(ORCID = "0000-0002-9547-3251")),
person(given = "Ian",
family = "Cannell",
role = "ths",
email = "icannell@mit.edu",
comment = c(ORCID = "0000-0001-5832-9210")))
Maintainer: Konstantin Krismer <krismer@mit.edu>
Description: transite is a computational method that allows
comprehensive analysis of the regulatory role of RNA-binding proteins
in various cellular processes by leveraging preexisting gene
expression data and current knowledge of binding preferences of
RNA-binding proteins.
License: MIT + file LICENSE
Depends:
R (>= 3.5)
Imports:
BiocGenerics (>= 0.26.0),
Biostrings (>= 2.48.0),
dplyr (>= 0.7.6),
GenomicRanges (>= 1.32.6),
ggplot2 (>= 3.0.0),
gridExtra (>= 2.3),
methods,
parallel,
Rcpp (>= 0.12.18),
scales (>= 1.0.0),
stats,
TFMPvalue (>= 0.0.8),
utils
Suggests:
knitr (>= 1.20),
rmarkdown (>= 1.10),
roxygen2 (>= 6.1.0)
LinkingTo:
Rcpp (>= 0.12.18)
VignetteBuilder:
knitr
biocViews: GeneExpression, Transcription,
DifferentialExpression, Microarray, mRNAMicroarray, Genetics,
GeneSetEnrichment
Encoding: UTF-8
RoxygenNote: 6.1.0
SystemRequirements: C++11
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