(inactive) artdeco

[RaikOtto]

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

• Repository: https://github.com/RaikOtto/artdeco

Confirm the following by editing each check box to '[x]'

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[bioc-issue-bot]

Hi @RaikOtto

Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: artdeco
Title: Alikeness based on Regression on Transciptome DECOnvolution
Version: 0.99.0
Authors@R: person("Raik", "Otto", email = "raik.otto@hu-berlin.de", role = c("aut", "cre"))
Description: This packages determines the similarity cancer sample
 transcriptomes to samples with known differentiation stage. Training data input 
 are healthy training scRNA samples and either RNA-seq Bulk or microarray data. 
 The output is an estimate of the input's similarity to pre-trained differentiated stages.
Imports:
    stringr,
    ggplot2,
    limma,
    msir,
    stats,
    bseqsc,
    ggbiplot,
    pheatmap
Depends: 
    R (>= 3.5)
License: Artistic-2.0
LazyData: TRUE
Type: Package
Maintainer: 'Raik Otto' <raik.otto@hu-berlin.de>
Date: 2018-11-07
Author: Raik Otto
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2018-11-07 17:31:35 UTC; raikotto
Suggests: 
    testthat,
    knitr,
    rmarkdown,
    RUnit
biocViews:
    Sequencing,
    RNASeq,
    SupportVectorMachine,
    GeneExpression,
    Microarray,
    Regression
VignetteBuilder: knitr
Encoding: UTF-8

[bioc-issue-bot]

A reviewer has been assigned to your package. Learn what to expect during the review process.

IMPORTANT: Please read the instructions for setting up a push hook on your repository, or further changes to your repository will NOT trigger a new build.

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

[Liubuntu]

Hi @RaikOtto

Please seek to address all the ERRORS / WARNINGS and as much as the NOTE messages in the building report. Only after that, an official review will be given. But please feel free to comment back here with any questions. Thanks!

Best, Qian

[RaikOtto]

Dear Qian,

thanks for your message. Please delete the submitted package. Following the error message produced during the server check, we found out that a required R dependency package (Cibersort) is neither available on Bioconductor nor on CRAN and thus we cannot publish our package on Bioconductor. Users will have to pre-install the required software manually before installing our software.

Best,

Raik

[Liubuntu]

Hi @RaikOtto ,

Thank you for letting me know. I'll close the issue.

Best, Qian

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

adc17e1 update

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

3be32ad update 184ed12 update e4c3004 changing and deleting files 954f645 update

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR, WARNINGS". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/artdeco to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

0bba107 update

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR, WARNINGS". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/artdeco to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

[bioc-issue-bot]

This issue is being closed because there has been no progress for an extended period of time. You may reopen the issue when you have the time to actively participate in the review / submission process. Please also keep in mind that a package accepted to Bioconductor requires a commitment on your part to ongoing maintenance.

Thank you for your interest in Bioconductor.