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Bioconductor / DelayedArray

A unified framework for working transparently with on-disk and in-memory array-like datasets
https://bioconductor.org/packages/DelayedArray
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Bioconductor devel / multiple methods tables found for ‘aperm’ #102

Closed bbimber closed 1 month ago

bbimber commented 2 years ago

Hello,

We have R code that indirectly depends on DelayedArray and we have tests that run against the bioconductor devel branch. I realize devel isnt stable, but we just started getting warnings like: "multiple methods tables found for ‘aperm’", which fail R CMD CHECK. There seem to be recent commits here around that aperm, so I thought I'd report this in case there is anything to look at. If you'd like me to post more detail on this let me know.

hpages commented 2 years ago

Ah.. it seems that I forgot to bump DelayedArray's version when I moved the aperm() S4 generic from DelayedArray to BiocGenerics a few days ago :confused: As a consequence I guess you still have the "old" DelayedArray (version 0.23.1) with the aperm() S4 generic in it but you have the new version of BiocGenerics (0.43.4) which also defines the aperm() S4 generic.

I just bumped DelayedArray version to 0.23.2. This new version should become available via BiocManager::install() in BioC devel in the next 24-48 hours or so.

Cheers, H.