I’d like to participate in this. It could lead to:
[ ] Review + ExperimentHub package of current technologies for single-cell multimodal data. This is underway already and I can present some slides. Open to co-authors interested in contributing.
[ ] Downloading data from a single-cell multimodal dataset, representing it using existing infrastructure, performing a basic analysis, and identifying challenges.
[ ] creating a GTEx MultiAssayExperiment (not single-cell but multimodal).
Advance "homework":
review slides about current single-cell multi-omic data types. Find demo datasets to work with, even write little R scripts to download them and create base Bioconductor objects*
study the GTEx download site, choose a set of files for integration, write scripts do download and create base Bioconductor objects*
Base Bioconductor objects like matrix, DataFrame, DelayedArray
I’d like to participate in this. It could lead to:
Advance "homework":
review slides about current single-cell multi-omic data types. Find demo datasets to work with, even write little R scripts to download them and create base Bioconductor objects*
study the GTEx download site, choose a set of files for integration, write scripts do download and create base Bioconductor objects*
Base Bioconductor objects like matrix, DataFrame, DelayedArray