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Bioconductor / ExperimentHub

Client to access ExperimentHub resources
https://bioconductor.org/packages/ExperimentHub
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Cannot connect to ExperimentHub server #36

Closed qingbinzhou closed 7 months ago

qingbinzhou commented 10 months ago

hub <- ExperimentHub() Cannot connect to ExperimentHub server, using 'localHub=TRUE' instead Using 'localHub=TRUE' If offline, please also see BiocManager vignette section on offline use Error in collect(): ! Failed to collect lazy table. Caused by error in db_collect(): ! Arguments in ... must be used. ✖ Problematic argument: • ..1 = Inf ℹ Did you misspell an argument name? Backtrace:

  1. ExperimentHub::ExperimentHub()
  2. dbplyr:::collect.tbl_sql(., Inf)
  3. dbplyr::db_collect(x$src$con, sql, n = n, warn_incomplete = warn_incomplete, ...)
lshep commented 10 months ago

What is your sessionInfo() I believe this should have been resolved if you update to the recent versions of the packages. See https://github.com/Bioconductor/BiocFileCache/pull/50 (BiocFileCache is which the ExperimentHub cache is built on)