Update to Callithrix_jacchus.R

[alutservitz]

Hi, this isn't an issue, but I was not sure how to appropriately propose an addition to one of the NCBI assembly lists.

I'd like to add a newer assembly for marmoset to the list and also rename the current assembly listed (currently is listed as ferret). I wasn't sure of naming conventions for the assemblies, so I took the assembly names from NCBI.

Here are my proposed changes:

ORGANISM <- "Callithrix jacchus"

### List of assemblies by date.
ASSEMBLIES <- list(
    list(assembly="Callithrix jacchus-3.2",
         date="2010/01/22",
         assembly_accession="GCA_000004665.1",  # calJac3
         circ_seqs=character(0)),

    list(assembly="Callithrix_jacchus_cj1700_1.1",
         date="2020/05/22",
         assembly_accession="GCA_009663435.2",  # cj1700
         circ_seqs=character(0))
)

Here is the current version:

ORGANISM <- "Callithrix jacchus"

### List of assemblies by date.
ASSEMBLIES <- list(
    list(assembly="MusPutFurMale1.0",
         date="2010/01/22",
         assembly_accession="GCA_000004665.1",  # calJac3
         circ_seqs=character(0))
)

[hpages]

Hi @alutz3 ,

Thanks for reporting and sorry for the late answer. This has been addressed in recent devel versions of GenomeInfoDb. Please check it out and let me know if Callithrix_jacchus.R still doesn't look ok.

Thanks, H.