Enable Canfam6 offline mode

Bioconductor / GenomeInfoDb

Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

https://bioconductor.org/packages/GenomeInfoDb

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Enable Canfam6 offline mode #58

Closed Priceless-P closed 2 years ago

Priceless-P commented 2 years ago

I used saveAssembledMoleculesInfoFromUCSC() in the GenomeInfoDb/inst/extdata/assembled_molecules_info/UCSC/ folder to enable "offline mode" for canFam6.

I also tested getChromInfoFromUCSC("canFam6", assembled.molecules.only=TRUE) and it worked, retrieving the information relatively faster because it was pulled from canFam6.tab file created by saveAssembledMoleculesInfoFromUCSC()