several examples in the quick start chunk on the front page for
this repo fail. perhaps there is an authentication issue for some
of the commands. it would be very helpful to have links for the
authentication creation steps as the NCI GDC web pages do not give
a clear path to a workable approach -- where do i go, what do i do to
establish authentic credentials or know that i have failed to do so.
library(GenomicDataCommons)
endpoints()
available endpoints:
status, projects, cases, files, annotations, data, manifest,
slicing
?experiments
No documentation for ‘experiments’ in specified packages and libraries:
you could try ‘??experiments’
experiments(size=20)
Error: could not find function "experiments"
No suitable frames for recover()
status()
Error in curl::curl_fetch_memory(url, handle = handle) :
SSL connect error
several examples in the quick start chunk on the front page for this repo fail. perhaps there is an authentication issue for some of the commands. it would be very helpful to have links for the authentication creation steps as the NCI GDC web pages do not give a clear path to a workable approach -- where do i go, what do i do to establish authentic credentials or know that i have failed to do so.
Enter a frame number, or 0 to exit
1: status() 2: .gdc_get(paste(version, "status", sep = "/")) 3: GET(uri, add_headers(
X-Auth-Token= token), ...) 4: request_perform(req, hu$handle$handle) 5: request_fetch(req$output, req$url, handle) 6: request_fetch.write_memory(req$output, req$url, handle) 7: curl::curl_fetch_memory(url, handle = handle)locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] GenomicDataCommons_0.1.4 rmarkdown_1.3
loaded via a namespace (and not attached): [1] Rcpp_0.12.8 digest_0.6.10 rprojroot_1.1 R6_2.2.0
[5] jsonlite_1.2 backports_1.0.4 magrittr_1.5 evaluate_0.10
[9] httr_1.2.1 stringi_1.1.2 curl_2.3 xml2_1.0.0
[13] tools_3.4.0 stringr_1.1.0 htmltools_0.3.5 knitr_1.15.1