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Bioconductor / GenomicDataCommons

Provide R access to the NCI Genomic Data Commons portal.
http://bioconductor.github.io/GenomicDataCommons/
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command failed #43

Closed changiseng closed 7 years ago

changiseng commented 7 years ago

biocLite('Bioconductor/GenomicDataCommons')

BioC_mirror: https://bioconductor.org Using Bioconductor 3.5 (BiocInstaller 1.25.3), R 3.4.0 (2017-04-21). Installing github package(s) ‘Bioconductor/GenomicDataCommons’ Downloading GitHub repo Bioconductor/GenomicDataCommons@master from URL https://api.github.com/repos/Bioconductor/GenomicDataCommons/zipball/master Installing GenomicDataCommons "C:/PROGRA~1/R/R-34~1.0/bin/i386/R" --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ "C:/Users/User/AppData/Local/Temp/Rtmpe2qcsl/devtools158829604138/Bioconductor-GenomicDataCommons-e10a1d8" \ --library="C:/Program Files/R/R-3.4.0/library" --install-tests

錯誤: Command failed (65535)

Why did not it work?

seandavi commented 7 years ago

Hi, @changiseng.

GenomicDataCommons is now in the Bioconductor repository. So, try:

biocLite('GenomicDataCommons')

I'll look into what the issue is with the github installation (which is what happens when you install using "Bioconductor/GenomicDataCommons").

LiNk-NY commented 7 years ago

@changiseng Please try the command with the latest version of BiocInstaller and use the published version of the package as Sean suggested. I'm considering this closed. Thanks @seandavi. Regards, Marcel