Closed bioinfo-dirty-jobs closed 6 years ago
Everything in the GDC has a UUID, so what do the UUIDs represent (in other words, how did you get the UUIDs)? If you can share the UUIDs, that might be helpful.
@seandavi Thanks so much for the help.. I mean I take from paper some id like this:
bcr_patient_uuid
--
34C39A6B-DB6A-47E5-B0D4-5FA990EF7EB8
AAF93A92-2F93-477D-9EA4-D18AB7D4F258
F6509C51-3BDC-45CC-81FE-5E775236305A
F94615EA-551C-4F63-AF0D-5E49C87FC66E
and I want to donwload the expression data. What can I do?
uuids = c("34C39A6B-DB6A-47E5-B0D4-5FA990EF7EB8",
"AAF93A92-2F93-477D-9EA4-D18AB7D4F258",
"F6509C51-3BDC-45CC-81FE-5E775236305A",
"F94615EA-551C-4F63-AF0D-5E49C87FC66E")
files() %>%
filter( ~ cases.case_id %in% tolower(uuids) &
data_type == "Gene Expression Quantification" &
analysis.workflow_type=="HTSeq - Counts") %>%
ids() %>%
gdcdata()
I have another question: I have 3 UIDD and I want to download the expression data. How can do this task?