Closed bioinfo-dirty-jobs closed 6 years ago
You are trying to download controlled-access data, it appears. You'll either need to apply for access to TCGA data and use an access token or specify that the data are access=="open"
.
dati3=files() %>% filter(~ cases.case_id %in% tolower(data[,1]) &
data_format=="MAF" &
access=="open" &
analysis.workflow_type=="MuTect2 Variant Aggregation and Masking") %>% ids()
gdcdata(dati3,progress=TRUE)
I have this error: