Open lyijin opened 6 years ago
hi there,
i think there's a bug with the available_rnaseq_workflows() function--and i think i know what the problem is.
possible_workflows = files() %>% GenomicDataCommons::filter(~data_type == "Gene Expression Quantification" & data_type == "Gene Expression Quantification") %>% facet("analysis.workflow_type") %>% aggregations()
produces
> possible_workflows $`analysis.workflow_type` key doc_count 1 HTSeq - Counts 11571 2 HTSeq - FPKM 11571 3 HTSeq - FPKM-UQ 11571
which means that the return statement in the function
return(possible_workflows[["key"]])
returns NULL because one has to refer to $analysis.workflow_type.
$analysis.workflow_type
either of these replacements would work, and produce the intended return values!
> possible_workflows[['analysis.workflow_type']][['key']] [1] "HTSeq - Counts" "HTSeq - FPKM" "HTSeq - FPKM-UQ" > possible_workflows[[1]][['key']] [1] "HTSeq - Counts" "HTSeq - FPKM" "HTSeq - FPKM-UQ"
hi there,
i think there's a bug with the available_rnaseq_workflows() function--and i think i know what the problem is.
produces
which means that the return statement in the function
return(possible_workflows[["key"]])
returns NULL because one has to refer to
$analysis.workflow_type
.either of these replacements would work, and produce the intended return values!