Bioconductor / GenomicDataCommons

Provide R access to the NCI Genomic Data Commons portal.
http://bioconductor.github.io/GenomicDataCommons/
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Download Fails if File In Legacy Archive #72

Closed DarioS closed 2 years ago

DarioS commented 5 years ago

Some files were never harmonised and made available in the new data portal. One example is whole genome DNA sequencing, which is only available from Legacy Archive. The download fails with an error.

> gdcdata("62f53214-e1e5-42fe-821b-a2a656206e1f", token=T)
Error: '{"data": {"hits": [], "pagination": {"count": 0, "sort": "", "from": 0, "pages": 0, "total": 0, "page": 0, "size": 0}}, "warnings": {}}' does not exist in current working directory

Can this be made possible in the next version?

LiNk-NY commented 2 years ago

resolved in https://github.com/Bioconductor/GenomicDataCommons/pull/84