`readr` 2.0.0 causes console flooding

Bioconductor / GenomicDataCommons

Provide R access to the NCI Genomic Data Commons portal.

http://bioconductor.github.io/GenomicDataCommons/

84 stars 23 forks source link

`readr` 2.0.0 causes console flooding #85

Closed KaiAragaki closed 3 years ago

KaiAragaki commented 3 years ago

Hello!

It appears that readr 2.0.0 (development but quickly approaching a release date) is causing some by flooding the console with warnings of the form

i Use `spec()` to retrieve the full column specification for this data
i Specify the column type or set `show_col_types = FALSE` to quiet this message

when calling gdcdata on a long list of manifest IDs (which is fairly common)

I believe the issues is coming from here, but I can't be sure.

Thank you!

KaiAragaki commented 3 years ago

Also normally I would just ignore the console, but it appears (for whatever reason) that there is somewhat of a slowdown associated with so many logs to console, at least in RStudio

KaiAragaki commented 3 years ago

Likely will be resolved with https://github.com/rstudio/rstudio/issues/9266 resolution. Closing issue.