field_picker function does not exist

Bioconductor / GenomicDataCommons

Provide R access to the NCI Genomic Data Commons portal.

http://bioconductor.github.io/GenomicDataCommons/

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field_picker function does not exist #89

Closed wt12318 closed 2 years ago

wt12318 commented 2 years ago

Hi,

I am reading the tutorial in Bioconductor: https://bioconductor.org/packages/release/bioc/vignettes/GenomicDataCommons/inst/doc/overview.html, but I found the field_picker function does not exist anymore:

field_picker("files")
#Error in field_picker("files") : could not find function "field_picker"

?field_picker()
#Error in .helpForCall(topicExpr, parent.frame()) : 
#  no methods for ‘field_picker’ and no documentation for it as a function

LiNk-NY commented 2 years ago

Hi Wutao, @wt12318 This was removed in #44 to reduce the amount of dependencies. Please use the grep_fields function instead. I am not sure if the code for the old function is available somewhere. Best, Marcel

wt12318 commented 2 years ago

Thank you. The old function was mentioned on The GenomicDataCommons Package 4.1.3: bioconductor.org/packages/release/bioc/vignettes/GenomicDataCommons/inst/doc/overview.html , maybe it should be updated :

LiNk-NY commented 2 years ago

This was cleaned up here 99d5eef4f4b969c582bf1d443ba5df5ecc724673 -MR