I'm trying to get the KO numbers for my genes that are in Symbol annotation. Running keggFind() returns NULL for some genes (no KO corresponds to the query), but when I look for that gene manually in the KEGG database I can find its KO. For example:
> names(keggFind("ko", "Acyp1"))
NULL
But, if you search Acyp1 in KEGG, you can find it:
Symbol | ACYP1, ACYPE
(RefSeq) acylphosphatase 1
K01512 acylphosphatase [EC:3.6.1.7]
However, running the following command retrieves the KO number:
Hi Everybody,
I'm trying to get the KO numbers for my genes that are in Symbol annotation. Running keggFind() returns NULL for some genes (no KO corresponds to the query), but when I look for that gene manually in the KEGG database I can find its KO. For example:
But, if you search Acyp1 in KEGG, you can find it:
Symbol | ACYP1, ACYPE (RefSeq) acylphosphatase 1 K01512 acylphosphatase [EC:3.6.1.7]
However, running the following command retrieves the KO number:
Any clarification is welcome.
Thank you,