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Bioconductor / LoomExperiment

A package to read, write, and manipulate loom files using LoomExperiments. Uses the loom file format from the Linnarson Lab. https://linnarssonlab.org/loompy/
https://www.bioconductor.org/packages/LoomExperiment
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generalization #1

Closed lawremi closed 6 years ago

lawremi commented 6 years ago

It looks like we've dropped the VariantExperiment project in preference to a Loom-based approach. But what about GDS support? How much of this can be generalized to support multiple backends?

mtmorgan commented 6 years ago

VariantExperiment is still underway; we've been exploring DelayedDataFrame and it is taking time.