Bioconductor / OrchestratingSingleCellAnalysis

Content for the OSCA Book.
http://bioconductor.org/books/devel/OSCA/
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Fixes to iSEE chapter #13

Closed LTLA closed 4 years ago

LTLA commented 4 years ago

It still runs but the apps will error out because some of the column metadata is no longer present, specifically related to the QC metrics. If you want the metrics, you will have to call addPerCellQC explicitly upon loading the SCE object, and then manage your own log-transformations.

@kevinrue @federicomarini @csoneson