Closed parsboy66 closed 4 years ago
Hi
The OSCAUtils
package is distributed as a subfolder of this repository, see:
https://github.com/Bioconductor/OSCABase/tree/master/package
See the DESCRIPTION
file in that folder that declares the package name: https://github.com/Bioconductor/OSCABase/blob/master/package/DESCRIPTION#L1
To install OSCAUtils
, any of the following should work:
BiocManager::install("Bioconductor/OSCABase", subdir = "package")
devtools::install_github("Bioconductor/OSCABase", subdir = "package")
Problem solved, but keep in mind this library needs 2 other packages which are not frequently used and users should install it in advance. as I am working on Conda env. I leave the instruction below to install those libs. for anybody who faced the same problem.
conda install -c conda-forge/label/cf201901 r-tinytex conda install -c biobuilds r-stringi
also its better to use force= TRUE in this one. BiocManager::install("Bioconductor/OSCABase", subdir = "package" ,force=TRUE)
Appreciate it and thank you for replying appropriately.
I'm kind of bemused about why you need to install OSCAUtils. This is a package that is literally only required to build the book, not to run any of the analysis code in the book.
I mean, if you want to use it, that's cool and all, but don't expect it to be stable.
hello I'm working by R v.3.6 but it seems library (OSCAUtils) is not supported by this version of R. when ever I tried to install this package, I faced with the error package ‘OSCAUtils’ is not available (for R version 3.6.2)”