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OrchestratingSingleCellAnalysis
Content for the OSCA Book.
http://bioconductor.org/books/devel/OSCA/
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Minor notes to self
#28
Closed
LTLA
closed
4 years ago
LTLA
commented
4 years ago
[x] Comment on the relationship between the entropy and library size.
[x] Demonstrate how to use
rowSubset()
for HVG selection.
[x] Add a "comparing clustering section", with
clusterRand
and
coassignProb
.
[x] Add a demonstration of
clusterPurity
as another cluster diagnostic.
[x] Truncate the
SingleR
section and refer people to the other book.
LTLA
commented
4 years ago
[x] Comment on
slingshot
's robustness to the MST problem.
[x] Mention the assumptions required to derive pseudotimes from velocities.
rowSubset()
for HVG selection.clusterRand
andcoassignProb
.clusterPurity
as another cluster diagnostic.