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OrchestratingSingleCellAnalysis
Content for the OSCA Book.
http://bioconductor.org/books/devel/OSCA/
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Clean up the multi-sample comparisons chapter
#33
Closed
LTLA
closed
4 years ago
LTLA
commented
4 years ago
[x] Fix the default recommendation for the number of cells per population.
[x] Create diagnostic MA plots for the normalization step.
[x] Streamline extraction of metadata from the friendlier
aggregateAcrossCells
output.
[x] Mention the importance of diagnostic plots for serious work.
[x] Try switching the convenient loop to use
muscat
again?
LTLA
commented
4 years ago
[x] Add a pseudo-bulk analysis to the Segerstolpe pancreas dataset.
aggregateAcrossCells
output.