persistent cache for result of src_organism()?

Bioconductor / Organism.dplyr

https://bioconductor.org/packages/Organism.dplyr

3 stars 3 forks source link

persistent cache for result of src_organism()? #4

Open vjcitn opened 7 years ago

vjcitn commented 7 years ago

From the current vignette:

Running src_organism() without a given path will save the sqlite file to a tempdir():

...

It might be more convenient if the default behavior was to write the sqlite into a folder like the one used for AnnotationHub, with src_organism checking for a relevant database when invoked. It takes a bit of time to build the database, and if I understand the default behavior correctly, it will be lost when the session ends.

mtmorgan commented 7 years ago

Yes, that's the intention when BiocFileCache (@lshep) (svn repository; your own credentials or readonly / readonly for username / password) becomes available.